Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
srsf7Serine and arginine rich splicing factor 7a. (252 aa)    
Predicted Functional Partners:
LOC101079137
Serine/arginine-rich splicing factor 9-like.
   
 0.997
LOC105417833
RRM domain-containing protein.
   
 0.995
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.995
srsf1
Serine and arginine rich splicing factor 1a.
   
0.993
LOC101066595
Uncharacterized protein.
   
 0.992
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.985
nxf1
Zgc:153681.
   
 0.985
TRA2B
Transformer 2 beta homolog.
   
 0.982
ALYREF
Aly/REF export factor.
   
 0.981
zrsr2
U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein.
   
 0.964
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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