Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101077689U2 small nuclear RNA auxiliary factor 1. (231 aa)    
Predicted Functional Partners:
H2SWV4_TAKRU
RRM domain-containing protein.
   
 0.991
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.991
LOC101065658
Uncharacterized protein.
  
  
 
0.901
srsf1
Serine and arginine rich splicing factor 1a.
   
 0.877
LOC101066595
Uncharacterized protein.
   
 0.877
sf3b1
Splicing factor 3b, subunit 1.
   
 0.876
LOC101070858
Serine and arginine rich splicing factor 2a.
   
 0.872
LOC101074667
RRM domain-containing protein.
   
 0.872
LOC101079137
Serine/arginine-rich splicing factor 9-like.
   
 0.843
sf3b2
Splicing factor 3b, subunit 2.
   
 0.836
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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