Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zc3h12aSi:dkey-206d17.12. (176 aa)    
Predicted Functional Partners:
tank
TBD domain-containing protein.
   
 
 0.783
rc3h1
Ring finger and CCCH-type domains 1b.
      
 0.728
LOC101069633
AT rich interactive domain 5A (MRF1-like).
   
  
 0.717
LOC101068196
TM2 domain containing 3.
      
 0.705
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.641
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 
 0.637
LOC101069645
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
  0.588
BFAR
Bifunctional apoptosis regulator.
      
 0.549
usp30
Ubiquitin carboxyl-terminal hydrolase.
      
 0.501
optn
Optineurin.
    
  0.497
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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