Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acod1Aconitate decarboxylase 1. (479 aa)    
Predicted Functional Partners:
ENSTRUP00000077609
Uncharacterized protein.
  
  
 
0.902
ephx2
Epoxide hydrolase 2, cytoplasmic.
    
 0.684
elp6
Elongator acetyltransferase complex subunit 6.
    
 
 0.649
LOC101064586
Serine--pyruvate aminotransferase.
  
 
 0.646
elp4
Elongator acetyltransferase complex subunit 4.
    
   0.642
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
   
 
 0.615
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.614
scp2
Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.613
eci2
Enoyl-CoA delta isomerase 2.
   
 
 0.593
amt
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.591
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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