Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
igsf3Immunoglobulin superfamily, member 3. (1056 aa)    
Predicted Functional Partners:
gdap2
Ganglioside induced differentiation associated protein 2.
     
 0.547
wdr3
WD repeat domain 3.
      
 0.546
GRIN2B
Glutamate ionotropic receptor NMDA type subunit 2B.
  
 
   0.444
ptgfrn
Uncharacterized protein.
      
 0.436
arid4b
Translocase of outer mitochondrial membrane 20.
  
  
  0.428
ENSTRUP00000053105
Lymphocyte cytosolic protein 2a.
    
  0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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