Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077427Calpain 5b; Belongs to the peptidase C2 family. (655 aa)    
Predicted Functional Partners:
LOC101068021
Calpain, small subunit 1 b.
 
 
 0.797
CAPNS1
Calpain small subunit 1.
 
 
 0.783
H2UMK9_TAKRU
Uncharacterized protein.
   
 0.720
ENSTRUP00000054781
Olfactory receptor class A related 4.
      
 0.587
capn15
Calpain 15; Belongs to the peptidase C2 family.
     
 0.459
ENSTRUP00000071154
Calpain-15-like.
     
 0.459
adcy3
Adenylate cyclase type 3; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.
      
 0.458
prmt3
Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
 0.426
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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