clstn1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

clstn1

Calsyntenin 1. (1036 aa)

Predicted Functional Partners:

APP

0.637

LOC101078447

0.637

klc2

0.519

ENSTRUP00000020173

0.519

LOC101061576

0.519

klc1

0.519

aplp2

0.511

LOC101075809

0.423

LOC101073222

0.423

apba2

0.423

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APP	ENSTRUP00000020173	ENSTRUP00000026366	ENSTRUP00000020173	Amyloid beta precursor protein.	Kinesin light chain 1a.	0.458
APP	LOC101061576	ENSTRUP00000026366	ENSTRUP00000056748	Amyloid beta precursor protein.	Kinesin light chain 3.	0.458
APP	LOC101073222	ENSTRUP00000026366	ENSTRUP00000050319	Amyloid beta precursor protein.	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	0.699
APP	LOC101075809	ENSTRUP00000026366	ENSTRUP00000032673	Amyloid beta precursor protein.	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	0.699
APP	apba2	ENSTRUP00000026366	ENSTRUP00000073476	Amyloid beta precursor protein.	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	0.699
APP	aplp2	ENSTRUP00000026366	ENSTRUP00000059205	Amyloid beta precursor protein.	Amyloid beta (A4) precursor-like protein 2.	0.961
APP	clstn1	ENSTRUP00000026366	ENSTRUP00000026732	Amyloid beta precursor protein.	Calsyntenin 1.	0.637
APP	klc1	ENSTRUP00000026366	ENSTRUP00000062939	Amyloid beta precursor protein.	Kinesin light chain 1a.	0.458
APP	klc2	ENSTRUP00000026366	ENSTRUP00000016584	Amyloid beta precursor protein.	TPR_REGION domain-containing protein.	0.458
ENSTRUP00000020173	APP	ENSTRUP00000020173	ENSTRUP00000026366	Kinesin light chain 1a.	Amyloid beta precursor protein.	0.458
ENSTRUP00000020173	LOC101061576	ENSTRUP00000020173	ENSTRUP00000056748	Kinesin light chain 1a.	Kinesin light chain 3.	0.902
ENSTRUP00000020173	LOC101078447	ENSTRUP00000020173	ENSTRUP00000066300	Kinesin light chain 1a.	Amyloid-beta A4 protein; Functional neuronal receptor which couples to intracellular signaling pathway through the GTP-binding protein G(O); Belongs to the APP family.	0.458
ENSTRUP00000020173	clstn1	ENSTRUP00000020173	ENSTRUP00000026732	Kinesin light chain 1a.	Calsyntenin 1.	0.519
ENSTRUP00000020173	klc1	ENSTRUP00000020173	ENSTRUP00000062939	Kinesin light chain 1a.	Kinesin light chain 1a.	0.901
ENSTRUP00000020173	klc2	ENSTRUP00000020173	ENSTRUP00000016584	Kinesin light chain 1a.	TPR_REGION domain-containing protein.	0.901
LOC101061576	APP	ENSTRUP00000056748	ENSTRUP00000026366	Kinesin light chain 3.	Amyloid beta precursor protein.	0.458
LOC101061576	ENSTRUP00000020173	ENSTRUP00000056748	ENSTRUP00000020173	Kinesin light chain 3.	Kinesin light chain 1a.	0.902
LOC101061576	LOC101078447	ENSTRUP00000056748	ENSTRUP00000066300	Kinesin light chain 3.	Amyloid-beta A4 protein; Functional neuronal receptor which couples to intracellular signaling pathway through the GTP-binding protein G(O); Belongs to the APP family.	0.458
LOC101061576	clstn1	ENSTRUP00000056748	ENSTRUP00000026732	Kinesin light chain 3.	Calsyntenin 1.	0.519
LOC101061576	klc1	ENSTRUP00000056748	ENSTRUP00000062939	Kinesin light chain 3.	Kinesin light chain 1a.	0.901