Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
uchl3Ubiquitin carboxyl-terminal hydrolase. (232 aa)    
Predicted Functional Partners:
LOC101077379
NEDD8 ubiquitin like modifier.
   
 0.930
H2SH60_TAKRU
Ubiquitin-like domain-containing protein.
   
 0.930
arfgef1-2
ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited).
   
 0.894
rps27a
Ribosomal protein S27a.
    
 0.875
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.861
senp8
SUMO peptidase family member, NEDD8 specific.
    
 0.776
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.775
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
   
   0.760
SLC16A2
Solute carrier family 16 member 2.
   
  
 0.751
psma4
Proteasome subunit alpha type.
   
 0.724
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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