upf3b protein (Takifugu rubripes) - STRING interaction network

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Score

upf3b

UPF3B regulator of nonsense mediated mRNA decay. (452 aa)

Predicted Functional Partners:

UPF2

0.998

LOC101074452

0.993

LOC101064659

0.990

UPF1

0.990

nxf1

0.975

smg5

0.970

smg6

0.945

eif4a3

0.944

rbm8a

0.936

srrm1

0.918

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101064659	LOC101074452	ENSTRUP00000000308	ENSTRUP00000078039	Uncharacterized protein.	Mago homolog, exon junction complex subunit.	0.747
LOC101064659	UPF1	ENSTRUP00000000308	ENSTRUP00000012294	Uncharacterized protein.	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	0.900
LOC101064659	UPF2	ENSTRUP00000000308	ENSTRUP00000018623	Uncharacterized protein.	UPF2 regulator of nonsense mediated mRNA decay.	0.998
LOC101064659	eif4a3	ENSTRUP00000000308	ENSTRUP00000029160	Uncharacterized protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.829
LOC101064659	nxf1	ENSTRUP00000000308	ENSTRUP00000077902	Uncharacterized protein.	Zgc:153681.	0.676
LOC101064659	rbm8a	ENSTRUP00000000308	ENSTRUP00000033509	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.946
LOC101064659	smg5	ENSTRUP00000000308	ENSTRUP00000031846	Uncharacterized protein.	SMG5 nonsense mediated mRNA decay factor.	0.954
LOC101064659	smg6	ENSTRUP00000000308	ENSTRUP00000077418	Uncharacterized protein.	SMG6 nonsense mediated mRNA decay factor.	0.952
LOC101064659	srrm1	ENSTRUP00000000308	ENSTRUP00000005845	Uncharacterized protein.	Serine/arginine repetitive matrix 1.	0.891
LOC101064659	upf3b	ENSTRUP00000000308	ENSTRUP00000026872	Uncharacterized protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.990
LOC101074452	LOC101064659	ENSTRUP00000078039	ENSTRUP00000000308	Mago homolog, exon junction complex subunit.	Uncharacterized protein.	0.747
LOC101074452	UPF1	ENSTRUP00000078039	ENSTRUP00000012294	Mago homolog, exon junction complex subunit.	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	0.747
LOC101074452	UPF2	ENSTRUP00000078039	ENSTRUP00000018623	Mago homolog, exon junction complex subunit.	UPF2 regulator of nonsense mediated mRNA decay.	0.869
LOC101074452	eif4a3	ENSTRUP00000078039	ENSTRUP00000029160	Mago homolog, exon junction complex subunit.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.996
LOC101074452	nxf1	ENSTRUP00000078039	ENSTRUP00000077902	Mago homolog, exon junction complex subunit.	Zgc:153681.	0.557
LOC101074452	rbm8a	ENSTRUP00000078039	ENSTRUP00000033509	Mago homolog, exon junction complex subunit.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
LOC101074452	smg5	ENSTRUP00000078039	ENSTRUP00000031846	Mago homolog, exon junction complex subunit.	SMG5 nonsense mediated mRNA decay factor.	0.697
LOC101074452	smg6	ENSTRUP00000078039	ENSTRUP00000077418	Mago homolog, exon junction complex subunit.	SMG6 nonsense mediated mRNA decay factor.	0.776
LOC101074452	srrm1	ENSTRUP00000078039	ENSTRUP00000005845	Mago homolog, exon junction complex subunit.	Serine/arginine repetitive matrix 1.	0.866
LOC101074452	upf3b	ENSTRUP00000078039	ENSTRUP00000026872	Mago homolog, exon junction complex subunit.	UPF3B regulator of nonsense mediated mRNA decay.	0.993