STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (954 aa)    
Predicted Functional Partners:
sf3b4
Splicing factor 3b, subunit 4.
    
 0.999
sf3b1
Splicing factor 3b, subunit 1.
   
 0.999
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.998
sf3b2
Splicing factor 3b, subunit 2.
   
 0.996
phf5a
PHD finger protein 5A.
    
 0.996
sf3b6
Splicing factor 3b, subunit 6.
    
  0.986
sf3a2
Splicing factor 3a, subunit 2.
    
 0.978
sf3a1
Splicing factor 3a, subunit 1.
   
 0.970
DHX15
DEAH-box helicase 15.
   
 0.957
ENSTRUP00000084024
annotation not available
   
 0.957
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.