STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gemin4Gem (nuclear organelle) associated protein 4. (1119 aa)    
Predicted Functional Partners:
gemin7
Gem (nuclear organelle) associated protein 7.
    
 0.999
gemin8
Gem (nuclear organelle) associated protein 8.
    
 0.998
LOC101073509
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.992
DDX20
Probable ATP-dependent RNA helicase DDX20.
   
 0.992
smn
Tudor domain-containing protein.
    
 0.985
gemin2
Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.
    
 0.979
strap
Serine/threonine kinase receptor associated protein.
    
 0.975
gemin6
Gem (nuclear organelle) associated protein 6.
     
 0.911
snrpb
Small nuclear ribonucleoprotein-associated protein.
    
 0.892
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
  0.826
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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