Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cib3Calcium and integrin binding family member 3. (187 aa)    
Predicted Functional Partners:
tmc2
Transmembrane channel-like protein.
    
 0.814
ENSTRUP00000081628
Transmembrane channel-like protein.
    
 0.814
ENSTRUP00000085095
Si:dkey-15b23.3.
    
 0.814
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.721
trip13
Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family.
    
 0.716
spice1
Spindle and centriole associated protein 1.
      
 0.695
tmie
Transmembrane inner ear.
     
 0.680
nedd9
Neural precursor cell expressed, developmentally down-regulated 9.
   
 0.675
htr5a
G_PROTEIN_RECEP_F1_2 domain-containing protein.
     
 0.661
lum
Lumican.
    
 0.640
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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