STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnat1MNAT1 component of CDK activating kinase. (332 aa)    
Predicted Functional Partners:
ccnh
Cyclin H; Belongs to the cyclin family.
   
 0.999
LOC115247568
General transcription factor IIH subunit.
   
 0.998
ercc2
Excision repair cross-complementation group 2.
    
 0.998
ercc3
Excision repair cross-complementation group 3.
    
 0.997
gtf2h3
General transcription factor IIH, polypeptide 3.
    
 0.997
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.996
LOC101074720
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.995
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
 0.994
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.984
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.978
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.