STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vkorc1Vitamin K epoxide reductase complex subunit 1. (163 aa)    
Predicted Functional Partners:
LOC101071102
Flavodoxin_2 domain-containing protein.
     
 0.927
nqo1
N-ribosyldihydronicotinamide:quinone reductase 2.
     
 0.927
vkorc1l1
VKc domain-containing protein.
  
  
 
0.902
pros1
Protein S.
   
  
 0.752
trpt1
tRNA phosphotransferase 1.
   
  
 0.512
f2
Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.
    
 
 0.497
tpmt
Thiopurine S-methyltransferase, tandem duplicate 1.
      
 0.440
thyn1
Thymocyte nuclear protein 1.
      
 0.434
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.404
ephx1
Epoxide hydrolase; Biotransformation enzyme that catalyzes the hydrolysis of arene and aliphatic epoxides to less reactive and more water soluble dihydrodiols by the trans addition of water. Belongs to the peptidase S33 family.
      
 0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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