STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vkorc1Vitamin K epoxide reductase complex subunit 1. (163 aa)    
Predicted Functional Partners:
LOC101071102
Flavodoxin_2 domain-containing protein.
     
 0.948
nqo1
N-ribosyldihydronicotinamide:quinone reductase 2.
     
 0.948
vkorc1l1
VKc domain-containing protein.
  
  
 
0.902
f2
Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.
    
 
 0.701
trpt1
tRNA phosphotransferase 1.
   
  
 0.646
tpmt
Thiopurine S-methyltransferase, tandem duplicate 1.
      
 0.637
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.634
tmem161a
Transmembrane protein 161A.
      
 0.618
LOC101069167
Canopy FGF signaling regulator 2.
   
    0.570
plcd3
Phosphoinositide phospholipase C.
      
 0.563
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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