STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trpc4apTransient receptor potential cation channel, subfamily C, member 4 associated protein a. (734 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.975
dcaf4
WD repeat domain 21.
   
 
 0.934
dcaf6
Ddb1 and cul4 associated factor 6.
    
 0.874
cul4b
Cullin 4B; Belongs to the cullin family.
    
 0.855
cul4a
Cullin 4A; Belongs to the cullin family.
    
 0.855
edem2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
 
 
  
 0.845
LOC101080234
DDA1 domain-containing protein.
    
  0.828
dda1
DET1 and DDB1 associated 1.
    
  0.828
dcaf5
Ddb1 and cul4 associated factor 5.
     
 0.792
dcaf8
DDB1 and CUL4 associated factor 8.
    
 0.767
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.