STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
myf5Myogenic factor. (240 aa)    
Predicted Functional Partners:
LOC101067579
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.755
LOC101079401
Transcription factor 3a.
    
 0.746
tcf12
Transcription factor 12.
    
 0.746
TCF4
Transcription factor 4.
    
 0.746
tcf3
Transcription factor 3b.
    
  0.741
LOC101073984
CREB binding protein a.
    
 
 0.740
LOC101072332
Transcription factor 12-like.
    
  0.705
mef2a
Myocyte enhancer factor 2aa.
    
 0.689
mef2d
Myocyte enhancer factor 2d.
    
 0.687
MEF2D
Myocyte enhancer factor 2D.
    
 0.687
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.