tex10 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tex10

Testis expressed 10. (951 aa)

Predicted Functional Partners:

wdr18

0.999

gnl2

0.977

LOC101071127

0.951

gtpbp4

0.932

znf593

0.922

gnl3

0.893

gnl3l

0.893

nle1

0.890

sdad1

0.879

pes1

0.875

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101071127	gnl2	ENSTRUP00000016710	ENSTRUP00000064689	Proline, glutamate and leucine rich protein 1.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.560
LOC101071127	gnl3	ENSTRUP00000016710	ENSTRUP00000013363	Proline, glutamate and leucine rich protein 1.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.473
LOC101071127	gnl3l	ENSTRUP00000016710	ENSTRUP00000033401	Proline, glutamate and leucine rich protein 1.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.431
LOC101071127	pes1	ENSTRUP00000016710	ENSTRUP00000040679	Proline, glutamate and leucine rich protein 1.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.695
LOC101071127	tex10	ENSTRUP00000016710	ENSTRUP00000027217	Proline, glutamate and leucine rich protein 1.	Testis expressed 10.	0.951
LOC101071127	wdr18	ENSTRUP00000016710	ENSTRUP00000085942	Proline, glutamate and leucine rich protein 1.	WD repeat domain 18.	0.985
gnl2	LOC101071127	ENSTRUP00000064689	ENSTRUP00000016710	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Proline, glutamate and leucine rich protein 1.	0.560
gnl2	gnl3	ENSTRUP00000064689	ENSTRUP00000013363	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.998
gnl2	gnl3l	ENSTRUP00000064689	ENSTRUP00000033401	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.998
gnl2	gtpbp4	ENSTRUP00000064689	ENSTRUP00000009193	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.999
gnl2	nle1	ENSTRUP00000064689	ENSTRUP00000003426	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Notchless homolog 1 (Drosophila).	0.987
gnl2	pes1	ENSTRUP00000064689	ENSTRUP00000040679	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
gnl2	sdad1	ENSTRUP00000064689	ENSTRUP00000034421	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.992
gnl2	tex10	ENSTRUP00000064689	ENSTRUP00000027217	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Testis expressed 10.	0.977
gnl2	wdr18	ENSTRUP00000064689	ENSTRUP00000085942	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	WD repeat domain 18.	0.991
gnl2	znf593	ENSTRUP00000064689	ENSTRUP00000054929	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Zinc finger protein 593.	0.989
gnl3	LOC101071127	ENSTRUP00000013363	ENSTRUP00000016710	Guanine nucleotide binding protein-like 3 (nucleolar).	Proline, glutamate and leucine rich protein 1.	0.473
gnl3	gnl2	ENSTRUP00000013363	ENSTRUP00000064689	Guanine nucleotide binding protein-like 3 (nucleolar).	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.998
gnl3	gnl3l	ENSTRUP00000013363	ENSTRUP00000033401	Guanine nucleotide binding protein-like 3 (nucleolar).	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.909
gnl3	gtpbp4	ENSTRUP00000013363	ENSTRUP00000009193	Guanine nucleotide binding protein-like 3 (nucleolar).	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.990