tex10 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tex10

Testis expressed 10. (951 aa)

Predicted Functional Partners:

wdr18

0.999

LOC101071127

0.998

pes1

0.977

gnl2

0.972

Crebzf

0.936

las1l

0.936

LOC101067942

0.931

znf593

0.929

gtpbp4

0.928

rpl21

0.927

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Crebzf	LOC101067942	ENSTRUP00000051314	ENSTRUP00000074869	CREB/ATF bZIP transcription factor.	Ribosomal protein L26.	0.696
Crebzf	LOC101071127	ENSTRUP00000051314	ENSTRUP00000016710	CREB/ATF bZIP transcription factor.	Proline, glutamate and leucine rich protein 1.	0.906
Crebzf	gnl2	ENSTRUP00000051314	ENSTRUP00000064689	CREB/ATF bZIP transcription factor.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.675
Crebzf	gtpbp4	ENSTRUP00000051314	ENSTRUP00000009193	CREB/ATF bZIP transcription factor.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.595
Crebzf	pes1	ENSTRUP00000051314	ENSTRUP00000040679	CREB/ATF bZIP transcription factor.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.855
Crebzf	rpl21	ENSTRUP00000051314	ENSTRUP00000012160	CREB/ATF bZIP transcription factor.	Ribosomal protein L21.	0.743
Crebzf	tex10	ENSTRUP00000051314	ENSTRUP00000027217	CREB/ATF bZIP transcription factor.	Testis expressed 10.	0.936
Crebzf	wdr18	ENSTRUP00000051314	ENSTRUP00000085942	CREB/ATF bZIP transcription factor.	WD repeat domain 18.	0.939
Crebzf	znf593	ENSTRUP00000051314	ENSTRUP00000054929	CREB/ATF bZIP transcription factor.	Zinc finger protein 593.	0.534
LOC101067942	Crebzf	ENSTRUP00000074869	ENSTRUP00000051314	Ribosomal protein L26.	CREB/ATF bZIP transcription factor.	0.696
LOC101067942	LOC101071127	ENSTRUP00000074869	ENSTRUP00000016710	Ribosomal protein L26.	Proline, glutamate and leucine rich protein 1.	0.821
LOC101067942	gnl2	ENSTRUP00000074869	ENSTRUP00000064689	Ribosomal protein L26.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.841
LOC101067942	gtpbp4	ENSTRUP00000074869	ENSTRUP00000009193	Ribosomal protein L26.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.856
LOC101067942	las1l	ENSTRUP00000074869	ENSTRUP00000079345	Ribosomal protein L26.	Uncharacterized protein.	0.696
LOC101067942	pes1	ENSTRUP00000074869	ENSTRUP00000040679	Ribosomal protein L26.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.917
LOC101067942	rpl21	ENSTRUP00000074869	ENSTRUP00000012160	Ribosomal protein L26.	Ribosomal protein L21.	0.999
LOC101067942	tex10	ENSTRUP00000074869	ENSTRUP00000027217	Ribosomal protein L26.	Testis expressed 10.	0.931
LOC101067942	wdr18	ENSTRUP00000074869	ENSTRUP00000085942	Ribosomal protein L26.	WD repeat domain 18.	0.928
LOC101067942	znf593	ENSTRUP00000074869	ENSTRUP00000054929	Ribosomal protein L26.	Zinc finger protein 593.	0.815
LOC101071127	Crebzf	ENSTRUP00000016710	ENSTRUP00000051314	Proline, glutamate and leucine rich protein 1.	CREB/ATF bZIP transcription factor.	0.906