STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101079446L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (378 aa)    
Predicted Functional Partners:
PC
Pyruvate carboxylase.
  
 0.977
got2
Aspartate aminotransferase.
   
 0.965
got1
Aspartate aminotransferase.
   
 0.964
LOC446067
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.962
LOC445899
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.962
pkm
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.962
me1
Malic enzyme.
  
 0.949
LOC101075777
Malate synthase-like.
  
 0.942
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
  
 0.937
pdhb
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.937
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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