STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx22T-box transcription factor 22. (519 aa)    
Predicted Functional Partners:
clpp
ATP-dependent Clp protease proteolytic subunit.
      
 0.786
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
      
 0.711
ENSTRUP00000057605
Zinc finger protein 280D.
      
 0.624
msx1
Homeobox domain-containing protein.
    
 
 0.607
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
      
 0.587
irf6
Interferon regulatory factor 6.
     
 0.582
meox2
Mesenchyme homeobox 2b.
    
 
 0.561
cetp
Cholesteryl ester transfer protein.
      
 0.560
LOC101071192
Grainyhead-like transcription factor 3.
      
 0.546
barx1
BARX homeobox 1.
   
 
 0.540
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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