LOC101068010 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101068010

Tetratricopeptide repeat domain 9B. (243 aa)

Predicted Functional Partners:

stk10

0.722

ppil1

0.668

pin4

0.643

LOC101070860

0.584

H2UCW4_TAKRU

0.584

LOC101076976

0.584

LOC101069079

0.584

rnf7

0.565

fbxw5

0.565

ENSTRUP00000050149

0.547

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000050149	H2UCW4_TAKRU	ENSTRUP00000050149	ENSTRUP00000034783	Si:ch211-131k2.3.	TSC complex subunit 1.	0.841
ENSTRUP00000050149	LOC101068010	ENSTRUP00000050149	ENSTRUP00000027286	Si:ch211-131k2.3.	Tetratricopeptide repeat domain 9B.	0.547
ENSTRUP00000050149	LOC101069079	ENSTRUP00000050149	ENSTRUP00000064481	Si:ch211-131k2.3.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.841
ENSTRUP00000050149	LOC101070860	ENSTRUP00000050149	ENSTRUP00000010994	Si:ch211-131k2.3.	TSC complex subunit 1b.	0.841
ENSTRUP00000050149	LOC101076976	ENSTRUP00000050149	ENSTRUP00000046069	Si:ch211-131k2.3.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.841
H2UCW4_TAKRU	ENSTRUP00000050149	ENSTRUP00000034783	ENSTRUP00000050149	TSC complex subunit 1.	Si:ch211-131k2.3.	0.841
H2UCW4_TAKRU	LOC101068010	ENSTRUP00000034783	ENSTRUP00000027286	TSC complex subunit 1.	Tetratricopeptide repeat domain 9B.	0.584
H2UCW4_TAKRU	LOC101070860	ENSTRUP00000034783	ENSTRUP00000010994	TSC complex subunit 1.	TSC complex subunit 1b.	0.551
LOC101068010	ENSTRUP00000050149	ENSTRUP00000027286	ENSTRUP00000050149	Tetratricopeptide repeat domain 9B.	Si:ch211-131k2.3.	0.547
LOC101068010	H2UCW4_TAKRU	ENSTRUP00000027286	ENSTRUP00000034783	Tetratricopeptide repeat domain 9B.	TSC complex subunit 1.	0.584
LOC101068010	LOC101069079	ENSTRUP00000027286	ENSTRUP00000064481	Tetratricopeptide repeat domain 9B.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.584
LOC101068010	LOC101070860	ENSTRUP00000027286	ENSTRUP00000010994	Tetratricopeptide repeat domain 9B.	TSC complex subunit 1b.	0.584
LOC101068010	LOC101076976	ENSTRUP00000027286	ENSTRUP00000046069	Tetratricopeptide repeat domain 9B.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.584
LOC101068010	fbxw5	ENSTRUP00000027286	ENSTRUP00000047800	Tetratricopeptide repeat domain 9B.	F-box and WD repeat domain containing 5.	0.565
LOC101068010	pin4	ENSTRUP00000027286	ENSTRUP00000081164	Tetratricopeptide repeat domain 9B.	Peptidyl-prolyl cis-trans isomerase.	0.643
LOC101068010	ppil1	ENSTRUP00000027286	ENSTRUP00000038580	Tetratricopeptide repeat domain 9B.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.668
LOC101068010	rnf7	ENSTRUP00000027286	ENSTRUP00000016085	Tetratricopeptide repeat domain 9B.	Ring finger protein 7.	0.565
LOC101068010	stk10	ENSTRUP00000027286	ENSTRUP00000070153	Tetratricopeptide repeat domain 9B.	Serine/threonine kinase 10.	0.722
LOC101069079	ENSTRUP00000050149	ENSTRUP00000064481	ENSTRUP00000050149	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Si:ch211-131k2.3.	0.841
LOC101069079	LOC101068010	ENSTRUP00000064481	ENSTRUP00000027286	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Tetratricopeptide repeat domain 9B.	0.584