STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSTKPhosphoseryl-tRNA kinase. (337 aa)    
Predicted Functional Partners:
sars
Seryl-tRNA synthetase.
     
 0.988
sars2
Seryl-tRNA synthetase 2, mitochondrial.
     
 0.981
eefsec
Eukaryotic elongation factor, selenocysteine-tRNA-specific.
      
 0.891
LOC101069254
Selenophosphate synthetase 2.
      
 0.833
kti12
KTI12 chromatin associated homolog.
      
 0.722
scly
Selenocysteine lyase.
      
 0.708
LOC101076679
tRNA selenocysteine 1 associated protein 1b.
      
 0.699
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
      
 0.698
rpl30
Ribosomal protein L30.
      
 0.684
secisbp2
SECIS binding protein 2.
      
 0.610
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.