pop1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pop1

POP1 homolog, ribonuclease P/MRP subunit. (955 aa)

Predicted Functional Partners:

LOC105419223

0.998

LOC101073011

0.997

LOC101067824

0.996

pop5

0.996

rpp38

0.996

rpp25l

0.994

rpp40

0.991

LOC101077808

0.988

POP4

0.986

LOC101073792

0.936

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101067824	LOC101073011	ENSTRUP00000005730	ENSTRUP00000051823	POP4 domain-containing protein.	Ribonuclease P and MRP subunit p25, b.	0.997
LOC101067824	LOC101073792	ENSTRUP00000005730	ENSTRUP00000004677	POP4 domain-containing protein.	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.	0.951
LOC101067824	LOC101077808	ENSTRUP00000005730	ENSTRUP00000057969	POP4 domain-containing protein.	Ribonuclease P 21 subunit.	0.980
LOC101067824	LOC105419223	ENSTRUP00000005730	ENSTRUP00000073060	POP4 domain-containing protein.	Uncharacterized protein.	0.998
LOC101067824	POP4	ENSTRUP00000005730	ENSTRUP00000067755	POP4 domain-containing protein.	POP4 homolog, ribonuclease P/MRP subunit.	0.543
LOC101067824	pop1	ENSTRUP00000005730	ENSTRUP00000027429	POP4 domain-containing protein.	POP1 homolog, ribonuclease P/MRP subunit.	0.996
LOC101067824	pop5	ENSTRUP00000005730	ENSTRUP00000041390	POP4 domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.997
LOC101067824	rpp25l	ENSTRUP00000005730	ENSTRUP00000032248	POP4 domain-containing protein.	Ribonuclease P/MRP 25 subunit-like.	0.992
LOC101067824	rpp38	ENSTRUP00000005730	ENSTRUP00000056365	POP4 domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.997
LOC101067824	rpp40	ENSTRUP00000005730	ENSTRUP00000008818	POP4 domain-containing protein.	Ribonuclease P/MRP 40 subunit.	0.997
LOC101073011	LOC101067824	ENSTRUP00000051823	ENSTRUP00000005730	Ribonuclease P and MRP subunit p25, b.	POP4 domain-containing protein.	0.997
LOC101073011	LOC101073792	ENSTRUP00000051823	ENSTRUP00000004677	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.	0.959
LOC101073011	LOC101077808	ENSTRUP00000051823	ENSTRUP00000057969	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P 21 subunit.	0.991
LOC101073011	LOC105419223	ENSTRUP00000051823	ENSTRUP00000073060	Ribonuclease P and MRP subunit p25, b.	Uncharacterized protein.	0.999
LOC101073011	POP4	ENSTRUP00000051823	ENSTRUP00000067755	Ribonuclease P and MRP subunit p25, b.	POP4 homolog, ribonuclease P/MRP subunit.	0.989
LOC101073011	pop1	ENSTRUP00000051823	ENSTRUP00000027429	Ribonuclease P and MRP subunit p25, b.	POP1 homolog, ribonuclease P/MRP subunit.	0.997
LOC101073011	pop5	ENSTRUP00000051823	ENSTRUP00000041390	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.999
LOC101073011	rpp25l	ENSTRUP00000051823	ENSTRUP00000032248	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P/MRP 25 subunit-like.	0.990
LOC101073011	rpp38	ENSTRUP00000051823	ENSTRUP00000056365	Ribonuclease P and MRP subunit p25, b.	Ribosomal_L7Ae domain-containing protein.	0.999
LOC101073011	rpp40	ENSTRUP00000051823	ENSTRUP00000008818	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P/MRP 40 subunit.	0.999