Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064904Homeobox protein vent1. (236 aa)    
Predicted Functional Partners:
lef1
Lymphoid enhancer-binding factor 1.
    
  0.641
LOC101071677
Ligand of numb-protein X 2b.
    
 0.534
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.529
chrd
Chordin.
      
 0.503
wdr90
WD repeat domain 90.
    
   0.417
LOC101074260
POU domain protein.
  
 
 0.415
LOC101070353
Lysyl oxidase a.
    
 0.410
pou2f1
POU domain protein.
    
 0.404
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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