STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cul5Cullin 5a; Belongs to the cullin family. (797 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.999
rnf7
Ring finger protein 7.
    
 0.997
arfgef1-2
ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited).
   
 0.987
cand1
Cullin-associated and neddylation-dissociated 1.
   
 0.985
LOC101070508
Elongin-B isoform X1.
    
 0.983
LOC101068670
Ubiquitin-like domain-containing protein.
    
 0.983
LOC115248454
RING-box protein 1.
    
 0.982
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.982
asb6
Ankyrin repeat and SOCS box containing 6.
    
 0.981
cbfb
Core-binding factor subunit beta.
    
 
 0.978
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.