Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx10RNA helicase. (840 aa)    
Predicted Functional Partners:
LOC101072761
UTP14C small subunit processome component.
   
 0.988
aatf
Apoptosis antagonizing transcription factor.
   
 
 0.987
heatr1
BP28CT domain-containing protein.
   
 0.986
nol10
Nucleolar protein 10.
   
 
 0.985
bysl
Bystin-like.
   
 
 0.983
ddx18
RNA helicase.
   
 
 0.979
wdr43
WD repeat domain 43.
   
 0.975
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.974
eed
PWP2 small subunit processome component.
   
 0.971
nom1
Nucleolar protein with MIF4G domain 1.
   
 
 0.970
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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