Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101073544Retinal homeobox gene 1. (350 aa)    
Predicted Functional Partners:
LOC101078807
SIX homeobox 7.
    
 
 0.660
LOC101073512
Paired box 2a.
    
 0.610
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.529
neurod1
Neurogenic differentiation factor.
      
 0.495
H2TKA6_TAKRU
T-box transcription factor 2a.
    
 0.471
ascl1
Achaete-scute family bHLH transcription factor 1a.
    
 0.466
Zpr1
Zpr1 domain-containing protein.
      
 0.464
wdr90
WD repeat domain 90.
    
   0.417
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 
 0.414
grk7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.407
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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