close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc38a6Solute carrier family 38 member 6. (453 aa)    
Predicted Functional Partners:
LOC101061287
Ras-related GTP binding A.
   
 0.666
rab3gap1
RAB3 GTPase activating protein subunit 1.
   
    0.653
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
 0.639
anapc15
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
    
 0.609
lamtor5
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.
    
 0.604
lamtor4
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.
    
 0.586
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.572
LOC101074895
Nocturnin.
   
    0.534
LOC101067716
Nocturnin.
   
    0.534
prepl
Prolyl endopeptidase like.
    
 
 0.488
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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