ice2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ice2

Interactor of little elongator complex ELL subunit 2. (893 aa)

Predicted Functional Partners:

ell

0.815

ice1

0.796

ENSTRUP00000059044

0.796

ell2

0.768

LOC101072365

0.768

LOC101080126

0.768

LOC101062747

0.755

zc3h4

0.731

ENSTRUP00000069471

0.729

eaf2

0.718

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000059044	LOC101062747	ENSTRUP00000059044	ENSTRUP00000039722	annotation not available	Uncharacterized protein.	0.421
ENSTRUP00000059044	LOC101072365	ENSTRUP00000059044	ENSTRUP00000061063	annotation not available	Uncharacterized protein.	0.452
ENSTRUP00000059044	LOC101080126	ENSTRUP00000059044	ENSTRUP00000086674	annotation not available	Si:ch211-13k12.2.	0.452
ENSTRUP00000059044	ell	ENSTRUP00000059044	ENSTRUP00000045699	annotation not available	Elongation factor RNA polymerase II.	0.452
ENSTRUP00000059044	ell2	ENSTRUP00000059044	ENSTRUP00000038344	annotation not available	Elongation factor, RNA polymerase II, 2.	0.452
ENSTRUP00000059044	ice2	ENSTRUP00000059044	ENSTRUP00000027641	annotation not available	Interactor of little elongator complex ELL subunit 2.	0.796
ENSTRUP00000059044	zc3h4	ENSTRUP00000059044	ENSTRUP00000019499	annotation not available	Zinc finger CCCH-type containing 4.	0.568
ENSTRUP00000069471	LOC101062747	ENSTRUP00000069471	ENSTRUP00000039722	RNA polymerase II associated protein 2.	Uncharacterized protein.	0.445
ENSTRUP00000069471	LOC101072365	ENSTRUP00000069471	ENSTRUP00000061063	RNA polymerase II associated protein 2.	Uncharacterized protein.	0.445
ENSTRUP00000069471	LOC101080126	ENSTRUP00000069471	ENSTRUP00000086674	RNA polymerase II associated protein 2.	Si:ch211-13k12.2.	0.445
ENSTRUP00000069471	ell	ENSTRUP00000069471	ENSTRUP00000045699	RNA polymerase II associated protein 2.	Elongation factor RNA polymerase II.	0.445
ENSTRUP00000069471	ell2	ENSTRUP00000069471	ENSTRUP00000038344	RNA polymerase II associated protein 2.	Elongation factor, RNA polymerase II, 2.	0.445
ENSTRUP00000069471	ice2	ENSTRUP00000069471	ENSTRUP00000027641	RNA polymerase II associated protein 2.	Interactor of little elongator complex ELL subunit 2.	0.729
ENSTRUP00000069471	zc3h4	ENSTRUP00000069471	ENSTRUP00000019499	RNA polymerase II associated protein 2.	Zinc finger CCCH-type containing 4.	0.569
LOC101062747	ENSTRUP00000059044	ENSTRUP00000039722	ENSTRUP00000059044	Uncharacterized protein.	annotation not available	0.421
LOC101062747	ENSTRUP00000069471	ENSTRUP00000039722	ENSTRUP00000069471	Uncharacterized protein.	RNA polymerase II associated protein 2.	0.445
LOC101062747	eaf2	ENSTRUP00000039722	ENSTRUP00000035145	Uncharacterized protein.	ELL associated factor 2.	0.797
LOC101062747	ice1	ENSTRUP00000039722	ENSTRUP00000016554	Uncharacterized protein.	Uncharacterized protein.	0.421
LOC101062747	ice2	ENSTRUP00000039722	ENSTRUP00000027641	Uncharacterized protein.	Interactor of little elongator complex ELL subunit 2.	0.755
LOC101062747	zc3h4	ENSTRUP00000039722	ENSTRUP00000019499	Uncharacterized protein.	Zinc finger CCCH-type containing 4.	0.470