Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062524Uncharacterized protein. (1022 aa)    
Predicted Functional Partners:
ENSTRUP00000067517
Collagen, type VI, alpha 1.
   
 0.972
col6a6
Collagen, type VI, alpha 4a.
   
0.928
H2TTQ9_TAKRU
Uncharacterized protein.
    
 0.911
cd44
Link domain-containing protein.
    
 0.906
LOC101079628
Collagen, type VI, alpha 2.
  
  
 
0.902
LOC101067303
Integrin beta; Belongs to the integrin beta chain family.
    
 0.806
LOC101061453
Integrin beta; Belongs to the integrin beta chain family.
    
 0.761
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.748
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
   
 0.739
LOC101068902
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.739
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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