sulf1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sulf1

Sulfatase 1. (1135 aa)

Predicted Functional Partners:

sgsh

0.773

LOC115248714

0.575

LOC101066982

0.574

med14

0.573

dnajc6

0.568

med6

0.565

med17

0.564

med21

0.561

med7

0.560

med10

0.520

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101066982	LOC115248714	ENSTRUP00000086933	ENSTRUP00000072562	Steryl-sulfatase isoform X1.	Steroid sulfatase (microsomal), isozyme S.	0.900
LOC101066982	med10	ENSTRUP00000086933	ENSTRUP00000056015	Steryl-sulfatase isoform X1.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.656
LOC101066982	med14	ENSTRUP00000086933	ENSTRUP00000054217	Steryl-sulfatase isoform X1.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.749
LOC101066982	med17	ENSTRUP00000086933	ENSTRUP00000010138	Steryl-sulfatase isoform X1.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.589
LOC101066982	med21	ENSTRUP00000086933	ENSTRUP00000071948	Steryl-sulfatase isoform X1.	Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.594
LOC101066982	med6	ENSTRUP00000086933	ENSTRUP00000029719	Steryl-sulfatase isoform X1.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.727
LOC101066982	med7	ENSTRUP00000086933	ENSTRUP00000076080	Steryl-sulfatase isoform X1.	Mediator of RNA polymerase II transcription subunit 7.	0.716
LOC101066982	sgsh	ENSTRUP00000086933	ENSTRUP00000028966	Steryl-sulfatase isoform X1.	N-sulfoglucosamine sulfohydrolase (sulfamidase).	0.509
LOC101066982	sulf1	ENSTRUP00000086933	ENSTRUP00000027733	Steryl-sulfatase isoform X1.	Sulfatase 1.	0.574
LOC115248714	LOC101066982	ENSTRUP00000072562	ENSTRUP00000086933	Steroid sulfatase (microsomal), isozyme S.	Steryl-sulfatase isoform X1.	0.900
LOC115248714	med10	ENSTRUP00000072562	ENSTRUP00000056015	Steroid sulfatase (microsomal), isozyme S.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.656
LOC115248714	med14	ENSTRUP00000072562	ENSTRUP00000054217	Steroid sulfatase (microsomal), isozyme S.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.749
LOC115248714	med17	ENSTRUP00000072562	ENSTRUP00000010138	Steroid sulfatase (microsomal), isozyme S.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.589
LOC115248714	med21	ENSTRUP00000072562	ENSTRUP00000071948	Steroid sulfatase (microsomal), isozyme S.	Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.594
LOC115248714	med6	ENSTRUP00000072562	ENSTRUP00000029719	Steroid sulfatase (microsomal), isozyme S.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.727
LOC115248714	med7	ENSTRUP00000072562	ENSTRUP00000076080	Steroid sulfatase (microsomal), isozyme S.	Mediator of RNA polymerase II transcription subunit 7.	0.716
LOC115248714	sgsh	ENSTRUP00000072562	ENSTRUP00000028966	Steroid sulfatase (microsomal), isozyme S.	N-sulfoglucosamine sulfohydrolase (sulfamidase).	0.509
LOC115248714	sulf1	ENSTRUP00000072562	ENSTRUP00000027733	Steroid sulfatase (microsomal), isozyme S.	Sulfatase 1.	0.575
dnajc6	sulf1	ENSTRUP00000047507	ENSTRUP00000027733	DnaJ (Hsp40) homolog, subfamily C, member 6.	Sulfatase 1.	0.568
med10	LOC101066982	ENSTRUP00000056015	ENSTRUP00000086933	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Steryl-sulfatase isoform X1.	0.656