tbcd protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tbcd

Tubulin folding cofactor D. (1191 aa)

Predicted Functional Partners:

tbcc

0.987

arl2

0.980

tbce

0.974

tbcb

0.959

tbca

0.950

pfdn4

0.884

mad1l1

0.876

mad2l1

0.862

rp2

0.833

cenpe

0.820

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arl2	pfdn4	ENSTRUP00000013047	ENSTRUP00000019201	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.534
arl2	rp2	ENSTRUP00000013047	ENSTRUP00000027656	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.812
arl2	tbcb	ENSTRUP00000013047	ENSTRUP00000028274	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor B.	0.937
arl2	tbcc	ENSTRUP00000013047	ENSTRUP00000009056	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor C.	0.900
arl2	tbcd	ENSTRUP00000013047	ENSTRUP00000027753	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor D.	0.980
arl2	tbce	ENSTRUP00000013047	ENSTRUP00000084595	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin-specific chaperone E.	0.931
cenpe	mad1l1	ENSTRUP00000073603	ENSTRUP00000038719	Centromere-associated protein E isoform X4.	Mitotic arrest deficient 1 like 1.	0.875
cenpe	mad2l1	ENSTRUP00000073603	ENSTRUP00000075953	Centromere-associated protein E isoform X4.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.944
cenpe	pfdn4	ENSTRUP00000073603	ENSTRUP00000019201	Centromere-associated protein E isoform X4.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.605
cenpe	tbcd	ENSTRUP00000073603	ENSTRUP00000027753	Centromere-associated protein E isoform X4.	Tubulin folding cofactor D.	0.820
cenpe	tbce	ENSTRUP00000073603	ENSTRUP00000084595	Centromere-associated protein E isoform X4.	Tubulin-specific chaperone E.	0.423
mad1l1	cenpe	ENSTRUP00000038719	ENSTRUP00000073603	Mitotic arrest deficient 1 like 1.	Centromere-associated protein E isoform X4.	0.875
mad1l1	mad2l1	ENSTRUP00000038719	ENSTRUP00000075953	Mitotic arrest deficient 1 like 1.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.999
mad1l1	pfdn4	ENSTRUP00000038719	ENSTRUP00000019201	Mitotic arrest deficient 1 like 1.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.737
mad1l1	tbcd	ENSTRUP00000038719	ENSTRUP00000027753	Mitotic arrest deficient 1 like 1.	Tubulin folding cofactor D.	0.876
mad1l1	tbce	ENSTRUP00000038719	ENSTRUP00000084595	Mitotic arrest deficient 1 like 1.	Tubulin-specific chaperone E.	0.789
mad2l1	cenpe	ENSTRUP00000075953	ENSTRUP00000073603	MAD2 mitotic arrest deficient-like 1 (yeast).	Centromere-associated protein E isoform X4.	0.944
mad2l1	mad1l1	ENSTRUP00000075953	ENSTRUP00000038719	MAD2 mitotic arrest deficient-like 1 (yeast).	Mitotic arrest deficient 1 like 1.	0.999
mad2l1	pfdn4	ENSTRUP00000075953	ENSTRUP00000019201	MAD2 mitotic arrest deficient-like 1 (yeast).	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.754
mad2l1	tbcd	ENSTRUP00000075953	ENSTRUP00000027753	MAD2 mitotic arrest deficient-like 1 (yeast).	Tubulin folding cofactor D.	0.862