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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln8CLN8 transmembrane ER and ERGIC protein. (288 aa)    
Predicted Functional Partners:
cln5
CLN5 intracellular trafficking protein.
      
 0.650
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.634
mfsd8
Major facilitator superfamily domain containing 8.
      
 0.623
cln3
Battenin.
      
 0.616
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.542
cln6
CLN6 transmembrane ER protein a.
      
 0.540
ENSTRUP00000058995
annotation not available
      
 0.540
tpp1
Tripeptidyl peptidase I.
    
 0.535
ENSTRUP00000083273
Uncharacterized protein.
    
 
 0.479
ccdc189
Uncharacterized protein.
    
 
 0.458
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.