Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fblim1Filamin binding LIM protein 1. (390 aa)    
Predicted Functional Partners:
fermt2
Fermitin family member 2.
    
 0.932
fermt1
Fermitin family member 1.
    
 0.932
FLNB
Filamin B.
   
 0.923
LOC101077561
Filamin C, gamma a (actin binding protein 280).
   
 0.923
LOC101062066
Uncharacterized protein.
    
 
 0.905
fermt3
Fermitin family member 3b.
    
 0.837
c5h17orf75
Zgc:153240.
      
 0.818
LOC101061858
Zgc:63972.
    
   0.757
LOC101061216
PID domain-containing protein.
    
 
 0.719
LOC101075447
Si:dkey-34e4.1.
    
 
 0.719
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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