Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d4TBC1 domain family, member 4. (1238 aa)    
Predicted Functional Partners:
tbc1d16
TBC1 domain family, member 16.
      
 0.695
dgke
Diacylglycerol kinase.
      
 0.634
erap1
Aminopeptidase.
     
 0.528
LOC101073265
Aminopeptidase.
     
 0.528
lnpep
Leucyl/cystinyl aminopeptidase.
     
 0.528
erap2
Aminopeptidase.
     
 0.528
LOC101064581
Uncharacterized protein.
    
 0.472
LOC101069277
RAB14, member RAS oncogene family.
    
 0.472
card14
Caspase recruitment domain-containing protein 14.
      
 0.455
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
      
 0.443
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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