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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm34RNA binding motif protein 34. (407 aa)    
Predicted Functional Partners:
rbm28
RNA binding motif protein 28.
   
 
 0.983
brix1
Brix domain containing 2.
   
 
 0.981
rpf2
Ribosome production factor 2 homolog.
   
 
 0.978
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.977
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.966
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 
 0.966
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
   
 0.962
ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
   
 0.956
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.947
ddx27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.
   
 0.942
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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