rbm34 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbm34

RNA binding motif protein 34. (407 aa)

Predicted Functional Partners:

ftsj3

0.991

ddx27

0.988

rbm28

0.987

brix1

0.985

rpf2

0.983

ddx24

0.982

ebna1bp2

0.980

ddx18

0.978

wdr74

0.978

nifk

0.976

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
brix1	ddx18	ENSTRUP00000028803	ENSTRUP00000013652	Brix domain containing 2.	RNA helicase.	0.986
brix1	ddx24	ENSTRUP00000028803	ENSTRUP00000014826	Brix domain containing 2.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.918
brix1	ddx27	ENSTRUP00000028803	ENSTRUP00000004802	Brix domain containing 2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	0.928
brix1	ebna1bp2	ENSTRUP00000028803	ENSTRUP00000052172	Brix domain containing 2.	EBNA1 binding protein 2.	0.998
brix1	ftsj3	ENSTRUP00000028803	ENSTRUP00000068158	Brix domain containing 2.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.978
brix1	nifk	ENSTRUP00000028803	ENSTRUP00000012509	Brix domain containing 2.	Nucleolar protein interacting with the FHA domain of MKI67.	0.992
brix1	rbm28	ENSTRUP00000028803	ENSTRUP00000033889	Brix domain containing 2.	RNA binding motif protein 28.	0.985
brix1	rbm34	ENSTRUP00000028803	ENSTRUP00000028199	Brix domain containing 2.	RNA binding motif protein 34.	0.985
brix1	rpf2	ENSTRUP00000028803	ENSTRUP00000046741	Brix domain containing 2.	Ribosome production factor 2 homolog.	0.994
brix1	wdr74	ENSTRUP00000028803	ENSTRUP00000061669	Brix domain containing 2.	WD repeat domain 74.	0.983
ddx18	brix1	ENSTRUP00000013652	ENSTRUP00000028803	RNA helicase.	Brix domain containing 2.	0.986
ddx18	ddx24	ENSTRUP00000013652	ENSTRUP00000014826	RNA helicase.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.975
ddx18	ddx27	ENSTRUP00000013652	ENSTRUP00000004802	RNA helicase.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	0.984
ddx18	ebna1bp2	ENSTRUP00000013652	ENSTRUP00000052172	RNA helicase.	EBNA1 binding protein 2.	0.986
ddx18	ftsj3	ENSTRUP00000013652	ENSTRUP00000068158	RNA helicase.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.989
ddx18	nifk	ENSTRUP00000013652	ENSTRUP00000012509	RNA helicase.	Nucleolar protein interacting with the FHA domain of MKI67.	0.987
ddx18	rbm28	ENSTRUP00000013652	ENSTRUP00000033889	RNA helicase.	RNA binding motif protein 28.	0.964
ddx18	rbm34	ENSTRUP00000013652	ENSTRUP00000028199	RNA helicase.	RNA binding motif protein 34.	0.978
ddx18	rpf2	ENSTRUP00000013652	ENSTRUP00000046741	RNA helicase.	Ribosome production factor 2 homolog.	0.989
ddx18	wdr74	ENSTRUP00000013652	ENSTRUP00000061669	RNA helicase.	WD repeat domain 74.	0.985