tbcb protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tbcb

Tubulin folding cofactor B. (249 aa)

Predicted Functional Partners:

tbcd

0.959

tbce

0.950

arl2

0.937

GAN

0.899

ppp1r14b

0.867

ENSTRUP00000050149

0.849

tbcc

0.730

tbca

0.722

cct4

0.710

rp2

0.705

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000050149	ppp1r14b	ENSTRUP00000050149	ENSTRUP00000039673	Si:ch211-131k2.3.	Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb.	0.450
ENSTRUP00000050149	tbcb	ENSTRUP00000050149	ENSTRUP00000028274	Si:ch211-131k2.3.	Tubulin folding cofactor B.	0.849
GAN	tbcb	ENSTRUP00000005579	ENSTRUP00000028274	Gigaxonin.	Tubulin folding cofactor B.	0.899
GAN	tbce	ENSTRUP00000005579	ENSTRUP00000084595	Gigaxonin.	Tubulin-specific chaperone E.	0.423
arl2	rp2	ENSTRUP00000013047	ENSTRUP00000027656	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.812
arl2	tbcb	ENSTRUP00000013047	ENSTRUP00000028274	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor B.	0.937
arl2	tbcc	ENSTRUP00000013047	ENSTRUP00000009056	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor C.	0.900
arl2	tbcd	ENSTRUP00000013047	ENSTRUP00000027753	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin folding cofactor D.	0.980
arl2	tbce	ENSTRUP00000013047	ENSTRUP00000084595	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	Tubulin-specific chaperone E.	0.931
cct4	tbcb	ENSTRUP00000051960	ENSTRUP00000028274	T-complex protein 1 subunit delta; Component of the chaperonin-containing T-complex (TRiC), a molecular chaperone complex that assists the folding of proteins upon ATP hydrolysis.	Tubulin folding cofactor B.	0.710
ppp1r14b	ENSTRUP00000050149	ENSTRUP00000039673	ENSTRUP00000050149	Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb.	Si:ch211-131k2.3.	0.450
ppp1r14b	tbcb	ENSTRUP00000039673	ENSTRUP00000028274	Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb.	Tubulin folding cofactor B.	0.867
rp2	arl2	ENSTRUP00000027656	ENSTRUP00000013047	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.812
rp2	tbca	ENSTRUP00000027656	ENSTRUP00000046848	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.445
rp2	tbcb	ENSTRUP00000027656	ENSTRUP00000028274	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin folding cofactor B.	0.705
rp2	tbcd	ENSTRUP00000027656	ENSTRUP00000027753	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin folding cofactor D.	0.833
rp2	tbce	ENSTRUP00000027656	ENSTRUP00000084595	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin-specific chaperone E.	0.820
tbca	rp2	ENSTRUP00000046848	ENSTRUP00000027656	Tubulin-specific chaperone A; Belongs to the TBCA family.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.445
tbca	tbcb	ENSTRUP00000046848	ENSTRUP00000028274	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor B.	0.722
tbca	tbcc	ENSTRUP00000046848	ENSTRUP00000009056	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor C.	0.697