STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101065535Solute carrier family 35 member F2. (392 aa)    
Predicted Functional Partners:
retreg3
Reticulophagy regulator family member 3.
   
   0.633
pomk
Protein O-mannose kinase.
    
   0.625
SLC35D3
Solute carrier family 35 member D3.
   
  
 0.572
atp5f1b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.543
SLC35A4
Solute carrier family 35 member A4.
      
 0.516
slc35b4
Solute carrier family 35 member B4.
      
 0.516
LOC101072911
Sidekick cell adhesion molecule 2a.
      
 0.514
SDK1
Sidekick cell adhesion molecule 1.
      
 0.514
bicc1
BicC family RNA binding protein 1a.
      
 0.513
LOC101077870
Bicaudal C homolog 2.
      
 0.513
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.