STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
timp-2bNTR domain-containing protein. (219 aa)    
Predicted Functional Partners:
LOC101061607
Matrix metallopeptidase 14b (membrane-inserted).
   
 0.849
LOC101071448
Matrix metallopeptidase 15b.
   
 0.849
mmp9
Uncharacterized protein.
   
 0.803
mmp21
Matrix metallopeptidase 21.
   
 0.685
mmp19
Matrix metallopeptidase 19.
   
 0.685
LOC101070441
Matrix metallopeptidase 16.
   
 0.685
Mmp24
Matrix metalloproteinase-24 (membrane-inserted).
   
 0.685
LOC101080029
Matrix metallopeptidase 25b.
   
 0.685
LOC101069093
Matrix metallopeptidase 16b (membrane-inserted).
   
 0.685
mmp14
Matrix metallopeptidase 14a (membrane-inserted).
   
 0.685
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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