STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
timp-2bNTR domain-containing protein. (219 aa)    
Predicted Functional Partners:
LOC101061607
Matrix metallopeptidase 14b (membrane-inserted).
   
 0.916
LOC101071448
Matrix metallopeptidase 15b.
   
 0.905
mmp9
Uncharacterized protein.
   
 0.860
timp3
NTR domain-containing protein.
   
 
 0.775
mmp13
Matrix metalloproteinase.
   
 0.744
mmpf1
Matrix metalloproteinase.
   
 0.715
H2SI73_TAKRU
ZnMc domain-containing protein.
   
 0.715
mmp2
Matrix metalloproteinase-2.
   
 0.715
LOC101070441
Matrix metallopeptidase 16.
   
 0.684
Mmp24
Matrix metalloproteinase-24 (membrane-inserted).
   
 0.684
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.