H2TUR5_TAKRU protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2TUR5_TAKRU

Uncharacterized protein. (331 aa)

Predicted Functional Partners:

tomm34

0.899

SPAG1

0.898

LOC101065172

0.896

leo1

0.860

tep1

0.655

bbs9

0.655

bbs7

0.635

cdc73

0.632

cdc16

0.625

paf1

0.622

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2TUR5_TAKRU	LOC101065172	ENSTRUP00000028424	ENSTRUP00000014057	Uncharacterized protein.	Uncharacterized protein.	0.896
H2TUR5_TAKRU	SPAG1	ENSTRUP00000028424	ENSTRUP00000049932	Uncharacterized protein.	Sperm associated antigen 1.	0.898
H2TUR5_TAKRU	bbs7	ENSTRUP00000028424	ENSTRUP00000018248	Uncharacterized protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.635
H2TUR5_TAKRU	bbs9	ENSTRUP00000028424	ENSTRUP00000085217	Uncharacterized protein.	Bardet-Biedl syndrome 9.	0.655
H2TUR5_TAKRU	cdc16	ENSTRUP00000028424	ENSTRUP00000048489	Uncharacterized protein.	Cell division cycle 16 homolog (S. cerevisiae).	0.625
H2TUR5_TAKRU	cdc73	ENSTRUP00000028424	ENSTRUP00000054471	Uncharacterized protein.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.632
H2TUR5_TAKRU	leo1	ENSTRUP00000028424	ENSTRUP00000043557	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.860
H2TUR5_TAKRU	paf1	ENSTRUP00000028424	ENSTRUP00000013978	Uncharacterized protein.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.622
H2TUR5_TAKRU	tep1	ENSTRUP00000028424	ENSTRUP00000063249	Uncharacterized protein.	Telomerase protein component 1.	0.655
H2TUR5_TAKRU	tomm34	ENSTRUP00000028424	ENSTRUP00000038836	Uncharacterized protein.	Translocase of outer mitochondrial membrane 34.	0.899
LOC101065172	H2TUR5_TAKRU	ENSTRUP00000014057	ENSTRUP00000028424	Uncharacterized protein.	Uncharacterized protein.	0.896
LOC101065172	bbs7	ENSTRUP00000014057	ENSTRUP00000018248	Uncharacterized protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.635
LOC101065172	bbs9	ENSTRUP00000014057	ENSTRUP00000085217	Uncharacterized protein.	Bardet-Biedl syndrome 9.	0.655
LOC101065172	cdc16	ENSTRUP00000014057	ENSTRUP00000048489	Uncharacterized protein.	Cell division cycle 16 homolog (S. cerevisiae).	0.625
LOC101065172	cdc73	ENSTRUP00000014057	ENSTRUP00000054471	Uncharacterized protein.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.632
LOC101065172	leo1	ENSTRUP00000014057	ENSTRUP00000043557	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.860
LOC101065172	paf1	ENSTRUP00000014057	ENSTRUP00000013978	Uncharacterized protein.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.622
LOC101065172	tep1	ENSTRUP00000014057	ENSTRUP00000063249	Uncharacterized protein.	Telomerase protein component 1.	0.655
SPAG1	H2TUR5_TAKRU	ENSTRUP00000049932	ENSTRUP00000028424	Sperm associated antigen 1.	Uncharacterized protein.	0.898
SPAG1	bbs7	ENSTRUP00000049932	ENSTRUP00000018248	Sperm associated antigen 1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.635