H2TUR5_TAKRU protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H2TUR5_TAKRU

Uncharacterized protein. (331 aa)

Predicted Functional Partners:

tomm34

0.899

SPAG1

0.898

LOC101065172

0.896

ruvbl1

0.819

leo1

0.712

LOC115252686

0.678

LOC101074647

0.678

pih1d2

0.653

LOC101061845

0.635

wdr92

0.615

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2TUR5_TAKRU	LOC101061845	ENSTRUP00000028424	ENSTRUP00000087389	Uncharacterized protein.	NME/NM23 family member 8; Belongs to the NDK family.	0.635
H2TUR5_TAKRU	LOC101065172	ENSTRUP00000028424	ENSTRUP00000014057	Uncharacterized protein.	Uncharacterized protein.	0.896
H2TUR5_TAKRU	LOC101074647	ENSTRUP00000028424	ENSTRUP00000067290	Uncharacterized protein.	RuvB-like protein 2.	0.678
H2TUR5_TAKRU	LOC115252686	ENSTRUP00000028424	ENSTRUP00000058555	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.678
H2TUR5_TAKRU	SPAG1	ENSTRUP00000028424	ENSTRUP00000049932	Uncharacterized protein.	Sperm associated antigen 1.	0.898
H2TUR5_TAKRU	leo1	ENSTRUP00000028424	ENSTRUP00000043557	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.712
H2TUR5_TAKRU	pih1d2	ENSTRUP00000028424	ENSTRUP00000056436	Uncharacterized protein.	PIH1 domain containing 2.	0.653
H2TUR5_TAKRU	ruvbl1	ENSTRUP00000028424	ENSTRUP00000026307	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.819
H2TUR5_TAKRU	tomm34	ENSTRUP00000028424	ENSTRUP00000038836	Uncharacterized protein.	Translocase of outer mitochondrial membrane 34.	0.899
H2TUR5_TAKRU	wdr92	ENSTRUP00000028424	ENSTRUP00000081850	Uncharacterized protein.	WD repeat domain 92.	0.615
LOC101061845	H2TUR5_TAKRU	ENSTRUP00000087389	ENSTRUP00000028424	NME/NM23 family member 8; Belongs to the NDK family.	Uncharacterized protein.	0.635
LOC101061845	LOC101065172	ENSTRUP00000087389	ENSTRUP00000014057	NME/NM23 family member 8; Belongs to the NDK family.	Uncharacterized protein.	0.635
LOC101061845	SPAG1	ENSTRUP00000087389	ENSTRUP00000049932	NME/NM23 family member 8; Belongs to the NDK family.	Sperm associated antigen 1.	0.635
LOC101061845	tomm34	ENSTRUP00000087389	ENSTRUP00000038836	NME/NM23 family member 8; Belongs to the NDK family.	Translocase of outer mitochondrial membrane 34.	0.494
LOC101065172	H2TUR5_TAKRU	ENSTRUP00000014057	ENSTRUP00000028424	Uncharacterized protein.	Uncharacterized protein.	0.896
LOC101065172	LOC101061845	ENSTRUP00000014057	ENSTRUP00000087389	Uncharacterized protein.	NME/NM23 family member 8; Belongs to the NDK family.	0.635
LOC101065172	LOC101074647	ENSTRUP00000014057	ENSTRUP00000067290	Uncharacterized protein.	RuvB-like protein 2.	0.696
LOC101065172	LOC115252686	ENSTRUP00000014057	ENSTRUP00000058555	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.696
LOC101065172	leo1	ENSTRUP00000014057	ENSTRUP00000043557	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.712
LOC101065172	pih1d2	ENSTRUP00000014057	ENSTRUP00000056436	Uncharacterized protein.	PIH1 domain containing 2.	0.704