rassf7 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rassf7

Ras association domain family member 7a. (441 aa)

Predicted Functional Partners:

PARD3

0.727

frmd6

0.711

LOC101071242

0.679

tp53bp2

0.645

ppp1r13b

0.645

gnptab

0.624

LOC101072096

0.615

LOC101064572

0.591

LOC101075146

0.496

LOC105416755

0.454

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101064572	LOC101071242	ENSTRUP00000026088	ENSTRUP00000045126	Tumor protein p53 binding protein, 2b.	Interleukin 10 receptor, beta.	0.466
LOC101064572	LOC101072096	ENSTRUP00000026088	ENSTRUP00000063528	Tumor protein p53 binding protein, 2b.	Apoptosis-stimulating of p53 protein 1-like isoform X2.	0.409
LOC101064572	frmd6	ENSTRUP00000026088	ENSTRUP00000017945	Tumor protein p53 binding protein, 2b.	FERM domain containing 6.	0.475
LOC101064572	ppp1r13b	ENSTRUP00000026088	ENSTRUP00000060300	Tumor protein p53 binding protein, 2b.	Protein phosphatase 1, regulatory subunit 13Bb.	0.570
LOC101064572	rassf7	ENSTRUP00000026088	ENSTRUP00000028445	Tumor protein p53 binding protein, 2b.	Ras association domain family member 7a.	0.591
LOC101064572	tp53bp2	ENSTRUP00000026088	ENSTRUP00000030889	Tumor protein p53 binding protein, 2b.	Tumor protein p53 binding protein, 2a.	0.641
LOC101071242	LOC101064572	ENSTRUP00000045126	ENSTRUP00000026088	Interleukin 10 receptor, beta.	Tumor protein p53 binding protein, 2b.	0.466
LOC101071242	PARD3	ENSTRUP00000045126	ENSTRUP00000006716	Interleukin 10 receptor, beta.	Par-3 family cell polarity regulator.	0.761
LOC101071242	frmd6	ENSTRUP00000045126	ENSTRUP00000017945	Interleukin 10 receptor, beta.	FERM domain containing 6.	0.807
LOC101071242	rassf7	ENSTRUP00000045126	ENSTRUP00000028445	Interleukin 10 receptor, beta.	Ras association domain family member 7a.	0.679
LOC101072096	LOC101064572	ENSTRUP00000063528	ENSTRUP00000026088	Apoptosis-stimulating of p53 protein 1-like isoform X2.	Tumor protein p53 binding protein, 2b.	0.409
LOC101072096	frmd6	ENSTRUP00000063528	ENSTRUP00000017945	Apoptosis-stimulating of p53 protein 1-like isoform X2.	FERM domain containing 6.	0.504
LOC101072096	rassf7	ENSTRUP00000063528	ENSTRUP00000028445	Apoptosis-stimulating of p53 protein 1-like isoform X2.	Ras association domain family member 7a.	0.615
LOC101075146	rassf7	ENSTRUP00000007624	ENSTRUP00000028445	Ras association domain family member 6.	Ras association domain family member 7a.	0.496
LOC105416755	rassf7	ENSTRUP00000024812	ENSTRUP00000028445	Par-3 family cell polarity regulator beta a.	Ras association domain family member 7a.	0.454
PARD3	LOC101071242	ENSTRUP00000006716	ENSTRUP00000045126	Par-3 family cell polarity regulator.	Interleukin 10 receptor, beta.	0.761
PARD3	rassf7	ENSTRUP00000006716	ENSTRUP00000028445	Par-3 family cell polarity regulator.	Ras association domain family member 7a.	0.727
frmd6	LOC101064572	ENSTRUP00000017945	ENSTRUP00000026088	FERM domain containing 6.	Tumor protein p53 binding protein, 2b.	0.475
frmd6	LOC101071242	ENSTRUP00000017945	ENSTRUP00000045126	FERM domain containing 6.	Interleukin 10 receptor, beta.	0.807
frmd6	LOC101072096	ENSTRUP00000017945	ENSTRUP00000063528	FERM domain containing 6.	Apoptosis-stimulating of p53 protein 1-like isoform X2.	0.504