STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072864Collagen beta(1-O)galactosyltransferase 1. (615 aa)    
Predicted Functional Partners:
plod1
Fe2OG dioxygenase domain-containing protein.
   
0.963
plod2
Fe2OG dioxygenase domain-containing protein.
   
0.963
colgalt2
Collagen beta(1-O)galactosyltransferase 2.
  
  
 
0.951
cercam
Cerebral endothelial cell adhesion molecule.
  
  
 
0.902
H2SI73_TAKRU
ZnMc domain-containing protein.
   
 
 0.694
mmpf1
Matrix metalloproteinase.
   
 
 0.614
LOC101062524
Uncharacterized protein.
   
 0.600
LOC101079628
Collagen, type VI, alpha 2.
   
 0.600
LOC101063589
Wu:fc38h03.
    
  0.577
H2USN9_TAKRU
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.
    
  0.577
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.