stx4 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

stx4

Syntaxin 4; Belongs to the syntaxin family. (297 aa)

Predicted Functional Partners:

vamp4

0.961

snap23

0.960

vamp7

0.950

snap25

0.948

ENSTRUP00000076224

0.935

LOC101073763

0.935

LOC101069563

0.922

LOC101072029-2

0.922

stx5

0.912

snap29

0.899

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000076224	LOC101069563	ENSTRUP00000076224	ENSTRUP00000011373	annotation not available	V-SNARE coiled-coil homology domain-containing protein.	0.809
ENSTRUP00000076224	LOC101072029-2	ENSTRUP00000076224	ENSTRUP00000071912	annotation not available	Zgc:92912.	0.809
ENSTRUP00000076224	LOC101073763	ENSTRUP00000076224	ENSTRUP00000083879	annotation not available	V-SNARE coiled-coil homology domain-containing protein.	0.900
ENSTRUP00000076224	snap23	ENSTRUP00000076224	ENSTRUP00000055061	annotation not available	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.992
ENSTRUP00000076224	snap25	ENSTRUP00000076224	ENSTRUP00000020803	annotation not available	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.920
ENSTRUP00000076224	snap29	ENSTRUP00000076224	ENSTRUP00000031641	annotation not available	Synaptosome associated protein 29.	0.647
ENSTRUP00000076224	stx4	ENSTRUP00000076224	ENSTRUP00000028565	annotation not available	Syntaxin 4; Belongs to the syntaxin family.	0.935
ENSTRUP00000076224	stx5	ENSTRUP00000076224	ENSTRUP00000033173	annotation not available	Syntaxin 5A; Belongs to the syntaxin family.	0.692
ENSTRUP00000076224	vamp4	ENSTRUP00000076224	ENSTRUP00000042199	annotation not available	Vesicle-associated membrane protein 4.	0.518
ENSTRUP00000076224	vamp7	ENSTRUP00000076224	ENSTRUP00000054967	annotation not available	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.784
LOC101069563	ENSTRUP00000076224	ENSTRUP00000011373	ENSTRUP00000076224	V-SNARE coiled-coil homology domain-containing protein.	annotation not available	0.809
LOC101069563	LOC101073763	ENSTRUP00000011373	ENSTRUP00000083879	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.809
LOC101069563	snap23	ENSTRUP00000011373	ENSTRUP00000055061	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.967
LOC101069563	snap25	ENSTRUP00000011373	ENSTRUP00000020803	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.932
LOC101069563	snap29	ENSTRUP00000011373	ENSTRUP00000031641	V-SNARE coiled-coil homology domain-containing protein.	Synaptosome associated protein 29.	0.813
LOC101069563	stx4	ENSTRUP00000011373	ENSTRUP00000028565	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 4; Belongs to the syntaxin family.	0.922
LOC101069563	stx5	ENSTRUP00000011373	ENSTRUP00000033173	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 5A; Belongs to the syntaxin family.	0.745
LOC101069563	vamp4	ENSTRUP00000011373	ENSTRUP00000042199	V-SNARE coiled-coil homology domain-containing protein.	Vesicle-associated membrane protein 4.	0.678
LOC101069563	vamp7	ENSTRUP00000011373	ENSTRUP00000054967	V-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.625
LOC101072029-2	ENSTRUP00000076224	ENSTRUP00000071912	ENSTRUP00000076224	Zgc:92912.	annotation not available	0.809