Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
yod1YOD1 deubiquitinase. (306 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.997
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.963
plaa
Phospholipase A2-activating protein.
    
 
 0.932
ubxn6
UBX domain protein 6.
    
 
 0.903
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.898
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.898
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.868
SPATA5
ATPase family protein 2 homolog.
   
 0.868
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.838
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 
 0.830
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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