Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep120Centrosomal protein 120. (1016 aa)    
Predicted Functional Partners:
spice1
Spindle and centriole associated protein 1.
   
 
 0.897
c21h9orf78
Zgc:103692.
    
   0.819
rrbp1
Rib_recp_KP_reg domain-containing protein.
   
 0.812
poc5
POC5 centriolar protein homolog (Chlamydomonas).
   
 
 0.760
neurl4
Neuralized E3 ubiquitin protein ligase 4.
    
 0.755
ENSTRUP00000087241
annotation not available
   
 
 0.751
cep164
Uncharacterized protein.
   
 0.749
plk4
Polo-like kinase 4 (Drosophila).
    
 0.743
ckap5
Cytoskeleton associated protein 5.
    
 
 0.729
cep76
Centrosomal protein 76.
      
 0.722
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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