Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ranbp3RAN binding protein 3b. (523 aa)    
Predicted Functional Partners:
rcc1
Regulator of chromosome condensation 1.
    
 
 0.979
XPO1
Exportin 1 (CRM1 homolog, yeast) b.
    
 
 0.910
ENSTRUP00000083097
Exportin 1 (CRM1 homolog, yeast) b.
    
 
 0.910
ranbp1
RAN binding protein 1.
    
 0.803
NUP62
Nucleoporin 62.
   
 
 0.754
xpo7
Exportin 7.
    
 
 0.749
nxt2
Nuclear transport factor 2-like export factor 2.
     
 0.733
ipo5
Karyopherin (importin) beta 3.
      
 0.722
nup153
Nucleoporin 153.
    
 
 0.708
kpna4
Importin subunit alpha; Belongs to the importin alpha family.
   
 
 0.690
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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