LOC101071804 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101071804

Paraspeckle component 1. (515 aa)

Predicted Functional Partners:

nudt21

0.745

H2SWV4_TAKRU

0.658

u2af2

0.658

cdc5l

0.655

LOC101077614

0.633

gtpbp6

0.597

hnrnpm

0.574

ewsr1

0.556

dhx9

0.555

LOC101062985

0.536

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2SWV4_TAKRU	LOC101062985	ENSTRUP00000016892	ENSTRUP00000060780	RRM domain-containing protein.	RNA-binding protein FUS.	0.524
H2SWV4_TAKRU	LOC101071804	ENSTRUP00000016892	ENSTRUP00000028608	RRM domain-containing protein.	Paraspeckle component 1.	0.658
H2SWV4_TAKRU	cdc5l	ENSTRUP00000016892	ENSTRUP00000088293	RRM domain-containing protein.	CDC5 cell division cycle 5-like (S. pombe).	0.890
H2SWV4_TAKRU	dhx9	ENSTRUP00000016892	ENSTRUP00000088315	RRM domain-containing protein.	DRBM domain-containing protein.	0.657
H2SWV4_TAKRU	ewsr1	ENSTRUP00000016892	ENSTRUP00000055139	RRM domain-containing protein.	EWS RNA-binding protein 1b.	0.446
H2SWV4_TAKRU	hnrnpm	ENSTRUP00000016892	ENSTRUP00000069160	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein M.	0.875
H2SWV4_TAKRU	nudt21	ENSTRUP00000016892	ENSTRUP00000046024	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.691
H2SWV4_TAKRU	u2af2	ENSTRUP00000016892	ENSTRUP00000068126	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.901
LOC101062985	H2SWV4_TAKRU	ENSTRUP00000060780	ENSTRUP00000016892	RNA-binding protein FUS.	RRM domain-containing protein.	0.524
LOC101062985	LOC101071804	ENSTRUP00000060780	ENSTRUP00000028608	RNA-binding protein FUS.	Paraspeckle component 1.	0.536
LOC101062985	dhx9	ENSTRUP00000060780	ENSTRUP00000088315	RNA-binding protein FUS.	DRBM domain-containing protein.	0.847
LOC101062985	ewsr1	ENSTRUP00000060780	ENSTRUP00000055139	RNA-binding protein FUS.	EWS RNA-binding protein 1b.	0.889
LOC101062985	hnrnpm	ENSTRUP00000060780	ENSTRUP00000069160	RNA-binding protein FUS.	Heterogeneous nuclear ribonucleoprotein M.	0.775
LOC101062985	u2af2	ENSTRUP00000060780	ENSTRUP00000068126	RNA-binding protein FUS.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.524
LOC101071804	H2SWV4_TAKRU	ENSTRUP00000028608	ENSTRUP00000016892	Paraspeckle component 1.	RRM domain-containing protein.	0.658
LOC101071804	LOC101062985	ENSTRUP00000028608	ENSTRUP00000060780	Paraspeckle component 1.	RNA-binding protein FUS.	0.536
LOC101071804	LOC101077614	ENSTRUP00000028608	ENSTRUP00000079531	Paraspeckle component 1.	TPR_REGION domain-containing protein.	0.633
LOC101071804	cdc5l	ENSTRUP00000028608	ENSTRUP00000088293	Paraspeckle component 1.	CDC5 cell division cycle 5-like (S. pombe).	0.655
LOC101071804	dhx9	ENSTRUP00000028608	ENSTRUP00000088315	Paraspeckle component 1.	DRBM domain-containing protein.	0.555
LOC101071804	ewsr1	ENSTRUP00000028608	ENSTRUP00000055139	Paraspeckle component 1.	EWS RNA-binding protein 1b.	0.556