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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078271Glutamic pyruvate transaminase (alanine aminotransferase) 2, like. (548 aa)    
Predicted Functional Partners:
got2
Aspartate aminotransferase.
   
 0.955
got1
Aspartate aminotransferase.
   
 0.952
LOC101064586
Serine--pyruvate aminotransferase.
  
 0.945
LOC101072881
Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.940
nags
N-acetylglutamate synthase.
  
 
 0.936
agxt2
Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.925
fh
Fumarate hydratase.
   
 0.903
LOC101070844
Alanine aminotransferase 1-like.
  
  
 
0.903
GPT
Glutamic--pyruvic transaminase.
  
  
0.902
gpt2
Glutamic pyruvate transaminase (alanine aminotransferase) 2.
  
  
 
0.901
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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