STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072033Zgc:113142; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (334 aa)    
Predicted Functional Partners:
oxct1
Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
     
 0.713
ACOT1
Acyl-CoA thioesterase 21.
   
 
 0.507
acadm
Acyl-CoA dehydrogenase medium chain.
   
 
 0.501
eci1
Enoyl-CoA delta isomerase 1; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.490
dhtkd1
Dehydrogenase E1 and transketolase domain containing 1.
   
 
 0.487
bdh2
3-hydroxybutyrate dehydrogenase, type 2.
   
 
 0.487
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
     
 0.474
hadh
Hydroxyacyl-CoA dehydrogenase.
   
 
 0.467
hmgcl
3-hydroxy-3-methylglutaryl-CoA lyase.
     
 0.467
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.
     
 0.467
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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