STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063159Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (912 aa)    
Predicted Functional Partners:
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.808
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.808
ENSTRUP00000064256
annotation not available
    
 0.808
Arid4b
Uncharacterized protein.
    
 0.808
LOC101074167
WD_REPEATS_REGION domain-containing protein.
   
 0.673
sin3a
SIN3 transcription regulator family member Aa.
   
 0.673
rbbp4
Retinoblastoma binding protein 4.
   
 0.673
LOC101075468
SIN3 transcription regulator family member Ab.
   
 0.673
sin3b
SIN3 transcription regulator family member B.
   
 0.673
wdr73
Uncharacterized protein.
   
 0.673
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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