LOC101061927 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101061927

Histidine rich calcium binding protein. (1257 aa)

Predicted Functional Partners:

nudt9

0.895

trpa1

0.627

slitrk6

0.576

trpc1

0.573

trpv4

0.560

trpv6

0.559

dclk1

0.528

chga

0.509

LOC101079972

0.493

LOC101079749

0.481

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101061927	LOC101079749	ENSTRUP00000028727	ENSTRUP00000011132	Histidine rich calcium binding protein.	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.	0.481
LOC101061927	LOC101079972	ENSTRUP00000028727	ENSTRUP00000016184	Histidine rich calcium binding protein.	Vomeronasal 2, receptor 1.	0.493
LOC101061927	chga	ENSTRUP00000028727	ENSTRUP00000034861	Histidine rich calcium binding protein.	Chromogranin A.	0.509
LOC101061927	dclk1	ENSTRUP00000028727	ENSTRUP00000078151	Histidine rich calcium binding protein.	Doublecortin-like kinase 1b.	0.528
LOC101061927	nudt9	ENSTRUP00000028727	ENSTRUP00000014878	Histidine rich calcium binding protein.	Nudix (nucleoside diphosphate linked moiety X)-type motif 9.	0.895
LOC101061927	slitrk6	ENSTRUP00000028727	ENSTRUP00000036164	Histidine rich calcium binding protein.	SLIT and NTRK-like family, member 6.	0.576
LOC101061927	trpa1	ENSTRUP00000028727	ENSTRUP00000079085	Histidine rich calcium binding protein.	Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.	0.627
LOC101061927	trpc1	ENSTRUP00000028727	ENSTRUP00000061210	Histidine rich calcium binding protein.	Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.	0.573
LOC101061927	trpv4	ENSTRUP00000028727	ENSTRUP00000075018	Histidine rich calcium binding protein.	Transient receptor potential cation channel, subfamily V, member 4; Belongs to the transient receptor (TC 1.A.4) family.	0.560
LOC101061927	trpv6	ENSTRUP00000028727	ENSTRUP00000023158	Histidine rich calcium binding protein.	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.	0.559
LOC101079749	LOC101061927	ENSTRUP00000011132	ENSTRUP00000028727	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.	Histidine rich calcium binding protein.	0.481
LOC101079749	trpa1	ENSTRUP00000011132	ENSTRUP00000079085	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.	Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.	0.548
LOC101079749	trpc1	ENSTRUP00000011132	ENSTRUP00000061210	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.	Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.	0.646
LOC101079972	LOC101061927	ENSTRUP00000016184	ENSTRUP00000028727	Vomeronasal 2, receptor 1.	Histidine rich calcium binding protein.	0.493
chga	LOC101061927	ENSTRUP00000034861	ENSTRUP00000028727	Chromogranin A.	Histidine rich calcium binding protein.	0.509
chga	dclk1	ENSTRUP00000034861	ENSTRUP00000078151	Chromogranin A.	Doublecortin-like kinase 1b.	0.510
dclk1	LOC101061927	ENSTRUP00000078151	ENSTRUP00000028727	Doublecortin-like kinase 1b.	Histidine rich calcium binding protein.	0.528
dclk1	chga	ENSTRUP00000078151	ENSTRUP00000034861	Doublecortin-like kinase 1b.	Chromogranin A.	0.510
nudt9	LOC101061927	ENSTRUP00000014878	ENSTRUP00000028727	Nudix (nucleoside diphosphate linked moiety X)-type motif 9.	Histidine rich calcium binding protein.	0.895
nudt9	trpa1	ENSTRUP00000014878	ENSTRUP00000079085	Nudix (nucleoside diphosphate linked moiety X)-type motif 9.	Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.	0.448